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Sunduz Keles

Sunduz Keles

Associate Professor
Departments of Statistics and Biostatistics & Medical Informatics

Ph.D., 2003, University of California, Berkeley

1246B Medical Sciences Center (MSC)
1300 University Avenue
Madison, WI 53705

Phone: 608-263-4533
(608) 265-4384 (Statistics)
Fax: (608) 265-7916

Email:

Sunduz Keles's Research Group
Research Interests
Statistical Genomics and Computational Biology; Statistical Computing; Statistical Inference with Censored Data.
Selected Publications

S. Keles, M. R. Segal (2002). Residual-based tree-structured survival analysis. Statistics in Medicine, 21: 313-326.

S. Keles, M. J. van der Laan, M. B. Eisen (2002). Identification of regulatory elements using a feature selection method. Bioinformatics, 18: 1167-1175.

S. Keles, M. J. van der Laan, S. Dudoit, B. Xing, M. B. Eisen (2003). Supervised detection of regulatory motifs in DNA sequences. Statistical Applications in Genetics and Molecular Biology, Vol. 2, No. 1, Article 5.

S. Dudoit, M. J. van der Laan, S. Keles, A. M. Molinaro, S. E. Sinisi, and S. L. Teng (2003). Loss-based estimation with cross-validation: applications to microarray data analysis and motif finding. SIGKDD Explorations, 5(2):37-49.

S. Keles, M. J. van der Laan, J. M. Robins (2004). Estimation of the bivariate survival function with right censored data structures. Handbook of Statistics, Volume 23: Advances in Survival Analysis, edited by N. Balakrishnan and C.R. Rao.

M. Miloslavsky, S.Keles, M. J. van der Laan, S. Butler (2004). Recurrent events analysis in the presence of time dependent covariates and dependent censoring. Journal of Royal Statistical Society Series B (Statistical Methodology), 66(1):239-257.

J. De Freitas, J. Kim, H. Poynton, T. Su, H. Wintz, T. Fox, P. Holman, A. Loguinov, S. Keles, M. J. van der Laan, and C. Vulpe (2004). Exploratory and confirmatory gene expression profiling of mac1. Journal of Biological Chemistry, 2(6):4450-4458.

M. J. van der Laan, S. Dudoit, S. Keles (2004). Asymptotic optimality of likelihood based cross-validation. Statistical Applications in Genetics and Molecular Biology, Vol. 3: No. 1, Article 4.

S. Keles, M. J. van der Laan, C. Vulpe (2004). Regulatory motif finding using logic regression. Bioinformatics, 20(16):2799-2811.

S. Keles, M.J. van der Laan, and   S. Dudoit (2004). Asymptotically optimal  model selection method for regression on censored outcomes. Bernoulli, 10 (6): 1011-1037.

H. Cinar, S. Keles and Y. Jin (2004). Identity of GABA motor neurons in C. elegans. To appear, Current Biology.

F. Lu,  S. Keles,  S. Wright,  and Wahba, G. (2005) A Framework for Kernel Regularization With Application to Protein Clustering. PNAS, 102(35):  12332-12337.

H. Cinar, S. Keles, and Y. Jin (2005). Expression Profiling of GABAergic Motor Neurons in Caenorhabditis elegans.  Current Biology, 15(4): 340 -346. (Journal website).

S. Keles, M. J. van der Laan,  Sandrine Dudoit, and Simon E. Cawley (2006). Multiple Testing Methods for ChIP-Chip High Density Oligonucleotide Array Data. Journal of Computational Biology. 13(3):579-613.

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Courses Taught
Stat 849: Theory and Application of Regression and Analysis of Variance-I (Fall 2004, 2005, 2006)
Stat 371: Introductory applied statistics for the life sciences (Spring 2005)
Stat 992: Statistical methods for biological sequence analysis (Spring 2006)
 
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