Biostatistics & Medical Informatics 776
Computer Sciences 776
Advanced Bioinformatics (Spring 2014)

General Course Information
What's New
Syllabus, Readings, Lecture Notes
Schedule
Homework, Project, Exam Info
DNA

Tentative Course Schedule

Week Date Subject
1 1/21 Course Overview
1/23 Learning Motif Models
2 1/28 Learning Motif Models
1/30 Learning Motif Models
3 2/4 Learning CRM Models
2/6 Learning CRM Models
4 2/11 Learning CRM Models
2/13 Learning CRM Models
5 2/18 Gene Finding
2/20 Gene Finding
6 2/25 Gene Finding
2/27 Gene Finding
7 3/4 Gene Finding
3/6 RNA-Seq
8 3/11 Midterm (in class)
3/13 RNA-Seq
3/14 Project Proposal Due
Spring Break
9 3/25 RNA Secondary Structure and SCFGs
3/27 RNA Secondary Structure and SCFGs
10 4/1 RNA Secondary Structure and SCFGs
4/3 RNA Secondary Structure and SCFGs
11 4/8 Large-scale alignment
4/10 Large-scale alignment
12 4/15 Large-scale alignment Project Progress Report Due
4/17 Comparative Network Analysis
13 4/22 Comparative Network Analysis
4/24 Genotype Analysis
14 4/29 Genotype Analysis
5/1 Genotype Analysis
15 5/6 Protein Structure Prediction
5/8 Protein Structure Prediction
5/9 Project Report Due
5/14 Final Exam