Computational Modeling of Bacterial Gene Regulation

Publications

• J. Bockhorst, Y. Qiu, J. Glasner, M. Liu, F. Blattner & M. Craven (2003).
  Predicting Bacterial Transcription Units using Sequence and Expression Data.
  Bioinformatics (special issue: Proceedings of the 11th International Conference on Intelligent Systems for Molecular Biology), in press.

• J. Bockhorst, M. Craven, D. Page, J. Shavlik & J. Glasner (2003).
  A Bayesian Network Approach to Operon Prediction.
  Bioinformatics, in press.

• M. Craven, D. Page, J. Shavlik, J. Bockhorst & J. Glasner (2000).
  A Probabilistic Learning Approach to Whole-Genome Operon Prediction.
  Proceedings of the 8th International Conference on Intelligent Systems for Molecular Biology, La Jolla, CA. AAAI Press.

Predictions

• Predicted transcription units for the E. coli K-12 Genome
  • ReadMe file
  • predictions file