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    <title>Colin Dewey News</title>
    <link>http://www.biostat.wisc.edu/~cdewey/news.html</link>
    <description>News about Colin Dewey.</description>
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    <pubDate>Tue, 19 Mar 2013 11:00:00 -0500</pubDate>
    <lastBuildDate>Tue, 19 Mar 2013 11:00:00 -0500</lastBuildDate>

    <item>
      <title>Paper published in PLoS Computational Biology</title>
      <link>http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1002936</link>
      <description><![CDATA["Comparative RNA-seq analysis in the unsequenced axolotl: The oncogene burst highlights early gene expression in the blastema"]]></description>
      <pubDate>Thu, 7 Mar 2013 11:00:00 -0500</pubDate>
      <guid isPermaLink="false">axolotl-blastema-paper-published</guid>
    </item>

    <item>
      <title>Paper published in Nucleic Acids Research</title>
      <link>http://nar.oxfordjournals.org/content/early/2013/01/09/nar.gks1362.abstract</link>
      <description><![CDATA["Rbm20 regulates titin alternative splicing as a splicing repressor"]]></description>
      <pubDate>Wed, 9 Jan 2013 11:00:00 -0500</pubDate>
      <guid isPermaLink="false">rbm20-titin-repressor-paper-published</guid>
    </item>

    <item>
      <title>Paper published in Genetics</title>
      <link>http://www.genetics.org/content/192/2/533.abstract/</link>
      <description><![CDATA["Genomic variation in natural populations of Drosophila melanogaster"]]></description>
      <pubDate>Mon, 1 Oct 2012 11:00:00 -0500</pubDate>
      <guid isPermaLink="false">50-fly-paper-published</guid>
    </item>

    <item>
      <title>Grant awarded by NIH</title>
      <link>http://projectreporter.nih.gov/project_info_description.cfm?aid=8402305&amp;icde=14104378</link>
      <description><![CDATA["Statistical methods for annotating repetitive genomic regions through ENCODE-derived data"]]></description>
      <pubDate>Mon, 17 Sep 2012 12:16:00 -0500</pubDate>
      <guid isPermaLink="false">nih-encode-keles-grant-awarded</guid>
    </item>

    <item>
      <title>Grant awarded by NIH</title>
      <link>http://projectreporter.nih.gov/project_info_description.cfm?aid=8370621&amp;icde=14104486</link>
      <description><![CDATA["The genetics and evolution of extreme body size in mice from Gough Island"]]></description>
      <pubDate>Mon, 10 Sep 2012 12:16:00 -0500</pubDate>
      <guid isPermaLink="false">nih-gough-mice-payseur-grant-awarded</guid>
    </item>

    <item>
      <title>Promoted to Associate Professor with tenure!</title>
      <pubDate>Sun, 1 Jul 2012 11:00:00 -0500</pubDate>
      <guid isPermaLink="false">associate-professor-promotion</guid>
    </item>

    <item>
      <title>Book chapter published in Evolutionary Genomics</title>
      <link>http://www.springerlink.com/content/g274434068345822/</link>
      <description><![CDATA["Whole-Genome Alignment"]]></description>
      <pubDate>Mon, 12 Mar 2012 11:00:00 -0500</pubDate>
      <guid isPermaLink="false">whole-genome-alignment-chapter-published</guid>
    </item>

    <item>
      <title>Paper published in IEEE transactions on visualization and computer graphics</title>
      <link>http://dx.doi.org/10.1109/TVCG.2011.232</link>
      <description><![CDATA["Sequence Surveyor: leveraging overview for scalable genomic alignment visualization"]]></description>
      <pubDate>Wed, 23 Nov 2011 11:00:00 -0500</pubDate>
      <guid isPermaLink="false">sequence-surveyor-paper-published</guid>
    </item>

    <item>
      <title>RSEM paper acquires designation of "Highly accessed"</title>
      <link>http://www.biomedcentral.com/1471-2105/12/323</link>
      <description></description>
      <pubDate>Fri, 23 Sep 2011 11:00:00 -0500</pubDate>
      <guid isPermaLink="false">rsem-paper-highly-accessed</guid>
    </item>

    <item>
      <title>Paper published in BMC Bioinformatics</title>
      <link>http://www.biomedcentral.com/1471-2105/12/323</link>
      <description><![CDATA["RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome"]]></description>
      <pubDate>Thu, 4 Aug 2011 11:00:00 -0500</pubDate>
      <guid isPermaLink="false">rsem-paper-published</guid>
    </item>

    <item>
      <title>Paper published in PLoS Computational Biology</title>
      <link>http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002111</link>
      <description><![CDATA["Discovering
transcription factor binding sites in highly repetitive regions of
genomes with multi-read analysis of ChIP-seq data"]]></description>
      <pubDate>Thu, 14 Jul 2011 11:00:00 -0500</pubDate>
      <guid isPermaLink="false">chipseq-multiread-paper-published</guid>
    </item>

    <item>
      <title>Paper published in Briefings in Bioinformatics</title>
      <link>http://bib.oxfordjournals.org/content/early/2011/06/24/bib.bbr040.abstract</link>
      <description><![CDATA["Positional orthology: putting genomic evolutionary
  relationships into context"]]></description>
      <pubDate>Sat, 25 Jun 2011 11:00:00 -0500</pubDate>
      <guid isPermaLink="false">toporthology-review-published</guid>
    </item>

    <item>
      <title>Paper published in Bioinformatics</title>
      <link>http://bioinformatics.oxfordjournals.org/cgi/content/abstract/btq539v1</link>
      <description><![CDATA["BUCKy: Gene Tree / Species Tree Reconciliation with Bayesian Concordance Analysis"]]></description>
      <pubDate>Tue, 21 Sep 2010 12:16:00 -0500</pubDate>
      <guid isPermaLink="false">bucky-published</guid>
    </item>

    <item>
      <title>Grant awarded by NIH</title>
      <link>http://projectreporter.nih.gov/project_info_description.cfm?aid=7899578&amp;icde=4550228</link>
      <description><![CDATA["Computational methods for the analysis of RNA-Seq data"]]></description>
      <pubDate>Wed, 30 Jun 2010 12:16:00 -0500</pubDate>
      <guid isPermaLink="false">nih-rnaseq-grant-awarded</guid>
    </item>

    <item>
      <title>Grant awarded by WisCID</title>
      <link>http://www.microbes.wisc.edu/wiscid/index.html</link>
      <description><![CDATA["Small RNAs of the human intestinal microbiome"]]></description>
      <pubDate>Tue, 27 Apr 2010 12:16:00 -0500</pubDate>
      <guid isPermaLink="false">wiscid-small-rna-grant-awarded</guid>
    </item>

    <item>
      <title>Paper published in Bioinformatics</title>
      <link>http://bioinformatics.oxfordjournals.org/cgi/content/abstract/btp692?ijkey=lXy5huW0jirxtFL&amp;keytype=ref</link>
      <description><![CDATA["RNA-Seq gene expression estimation with read mapping uncertainty"]]></description>
      <pubDate>Fri, 18 Dec 2009 12:16:00 -0500</pubDate>
      <guid isPermaLink="false">rsem-advanced-access</guid>
    </item>

    <item>
      <title>Paper accepted in Bioinformatics</title>
      <description><![CDATA["RNA-Seq gene expression estimation with read mapping uncertainty"]]></description>
      <pubDate>Tue, 15 Dec 2009 12:16:00 -0500</pubDate>
      <guid isPermaLink="false">rsem-accepted</guid>
    </item>

    <item>
      <title>Paper published in PLoS Genetics</title>
      <link>http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1000729</link>
      <description><![CDATA["Fine scale phylogenetic discordance across the house
  mouse genome"]]></description>
      <pubDate>Mon, 14 Dec 2009 12:16:00 -0500</pubDate>
      <guid isPermaLink="false">mouse-concordance-published</guid>
    </item>

    <item>
      <title>Paper published in PLoS Computational Biology</title>
      <link>http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1000392</link>
      <description><![CDATA["Fast Statistical Alignment"]]></description>
      <pubDate>Fri, 29 May 2009 12:16:00 -0500</pubDate>
      <guid isPermaLink="false">fsa-published</guid>
    </item>

    <item>
      <title>Paper accepted in PLoS Computational Biology</title>
      <link>http://math.berkeley.edu/~rbradley/papers/manual.pdf</link>
      <description><![CDATA["Fast Statistical Alignment"]]></description>
      <pubDate>Sun, 29 Mar 2009 12:16:00 -0500</pubDate>
      <guid isPermaLink="false">fsa-accepted</guid>
    </item>

    <item>
      <title>Teaching Science Masters Institute course on "Natural Selection &amp; Evolution"</title>
      <link>http://www.biology.wisc.edu/images/SMI.pdf</link>
      <description><![CDATA[Nov 12, 17, 26, & Dec 1]]></description>
      <pubDate>Mon, 12 Nov 2007 00:00:00 -0600</pubDate>
      <guid isPermaLink="false">teaching-smi-course</guid>
    </item>

    <item>
      <title>Paper published in Nature</title>
      <link>http://www.nature.com/nature/journal/v450/n7167/abs/nature06340.html</link>
      <description><![CDATA["Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures"]]></description>
      <pubDate>Wed, 07 Nov 2007 14:15:35 -0500</pubDate>
      <guid isPermaLink="false">twelve-drosophila-paper-published</guid>
    </item>
    <item>
      <title>Paper published in PLoS Biology</title>
      <link>http://dx.doi.org/10.1371/journal.pbio.0050310</link>
      <description><![CDATA["Population genomics: whole-genome analysis of polymorphism and divergence in Drosophila simulans"]]></description>
      <pubDate>Tue, 06 Nov 2007 14:15:48 -0500</pubDate>
      <guid isPermaLink="false">popgen-simulans-paper-published</guid>
    </item>
    <item>
      <title>ENCODE pilot project results in the media</title>
      <description><![CDATA[<a href="http://www.boston.com/news/science/articles/2007/06/14/dna_study_challenges_basic_ideas_in_genetics/">Boston Globe</a>, <a href="http://www.washingtonpost.com/wp-dyn/content/article/2007/06/13/AR2007061302466.html">Washington Post</a>, <a href="http://news.google.com/nwshp?tab=wn&ned=us&ncl=1117237902&hl=en">more...</a>]]></description>
      <pubDate>Thu, 14 Jun 2007 14:17:21 -0500</pubDate>
      <guid isPermaLink="false">encode-pilot-project-results-in-the-media</guid>
    </item>
    <item>
      <title>Paper published in Genome Research</title>
      <link>http://www.genome.org/cgi/content/abstract/17/6/760</link>
      <description><![CDATA["Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome"]]></description>
      <pubDate>Thu, 14 Jun 2007 14:15:48 -0500</pubDate>
      <guid isPermaLink="false">paper-published-in-genome-research</guid>
    </item>
    <item>
      <title>Paper published in Nature</title>
      <link>http://www.nature.com/nature/journal/v447/n7146/abs/nature05874.html</link>
      <description><![CDATA["Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project"]]></description>
      <pubDate>Thu, 14 Jun 2007 14:15:35 -0500</pubDate>
      <guid isPermaLink="false">ftest</guid>
    </item>
    <item>
      <title>Joined UW Comprehensive Cancer Center as member</title>
      <pubDate>Thu, 07 Jun 2007 00:00:00 -0500</pubDate>
      <guid isPermaLink="false">joined-uw-comprehenisve-cancer-center</guid>
    </item>
    <item>
      <title>Teaching BMI/CS 776 &quot;Advanced Bioinformatics&quot; during the Spring 2007 semester.</title>
      <pubDate>Tue, 23 Jan 2007 00:00:00 -0600</pubDate>
      <guid isPermaLink="false">teaching-bmics-776-advanced-bioinformatics-duri</guid>
    </item>
    <item>
      <title>Paper published in BMC Genomics: &quot;Compensatory relationships between splice sites and exonic splicing signals depending on the length of vertebrate introns&quot; </title>
      <pubDate>Fri, 08 Dec 2006 00:00:00 -0600</pubDate>
      <guid isPermaLink="false">paper-published-in-bmc-genomics-compensatory-rel</guid>
    </item>
    <item>
      <title>Joined the Computation and Informatics in Biology and Medicine program as faculty trainer.</title>
      <pubDate>Wed, 22 Nov 2006 00:00:00 -0600</pubDate>
      <guid isPermaLink="false">joined-the-computation-and-informatics-in-biology</guid>
    </item>
    <item>
      <title>Joined the Genomic Sciences Training Program as faculty trainer.</title>
      <pubDate>Fri, 22 Sep 2006 00:00:00 -0500</pubDate>
      <guid isPermaLink="false">joined-the-genomic-sciences-training-program-as-fa</guid>
    </item>
    <item>
      <title>Joined the Computer Sciences Department as affiliate faculty member.</title>
      <pubDate>Wed, 09 Aug 2006 00:00:00 -0500</pubDate>
      <guid isPermaLink="false">joined-the-computer-sciences-department-as-affilia</guid>
    </item>
    <item>
      <title>Joined the Genome Center of Wisconsin as member.</title>
      <pubDate>Tue, 01 Aug 2006 00:00:00 -0500</pubDate>
      <guid isPermaLink="false">joined-the-genome-center-of-wisconsin</guid>
    </item>
    <item>
      <title>Joined the Biostatistics and Medical Informatics Department as assistant professor.</title>
      <pubDate>Tue, 01 Aug 2006 00:00:00 -0500</pubDate>
      <guid isPermaLink="false">joined-the-biostatistics-and-medical-informatics-d-1</guid>
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