@conference{KK06, author = {John Kececioglu and Eagu Kim}, title = {Simple and fast inverse alignment}, booktitle = {Proceedings of the 10th ACM Conference on Research in Computational Molecular Biology}, pages = {441--455}, editor = {A. Apostolico, C. Guerra, S. Istrail, P. Pevzner, and M. Waterman}, publisher = {Springer-Verlag Lecture Notes in Bioinformatics 3909}, year = {2006}, key = {sequence analysis, parametric sequence alignment, substitution score matrices, affine gap penalties, supervised learning, linear programming, cutting plane algorithms} }