당곡중 1회 졸업 당곡중학교 1회 졸업 김이구

Eagu Kim

김이구 당곡중 1회 졸업 당곡중학교 1회 졸업

Curriculum vitæ^†

Research interests

Computational molecular biology, design and analysis of algorithms, combinatorial optimization, and cryptography.

Education

Ph.D.	in Computer Science, University of Arizona, Tucson, Arizona, August 2008 Dissertation: Inverse parametric alignment for accurate biological sequence comparison Advisor: John Kececioglu, minor: Mathematics
M.S.	in Computer Science, Yonsei University, Seoul, Korea Republic, February 1998 Thesis: An efficient public-key cryptosystem based on Rabin's one-way function Advisor: Jooseok Song
B.S.	in Computer Science, Hanyang University, Ansan, Korea Republic, February 1995

Professional experience

• Postdoctoral researcher (September 2008 to present)
  Department of Biostatistics and Medical Informatics, University of Wisconsin, Madison, Wisconsin
  Advisor: Colin Dewey
• Research assistant (August 2001 to June 2008)
  Department of Computer Science, University of Arizona, Tucson, Arizona
  Advisor: John Kececioglu
• Teaching assistant (September 1996 to August 1997)
  Department of Computer Science, Yonsei University, Seoul, Korea Republic
  Instructor: Jooseok Song
• Research engineer (January 1995 to July 1995)
  Switching division 2, LG Information and Communication, Anyang, Korea Republic
  

Honors and awards

• Graduate college fellowship (August 1999 to July 2000)
  College of Science, University of Arizona, Tucson, Arizona
• Undergraduate tuition scholarship (March 1993 to February 1995)
  Hanyang University, Ansan, Korea Republic

Publications^‡

• Eagu Kim, Travis Wheeler, and John Kececioglu (2009)
  "Learning models for aligning protein sequences with predicted secondary structure",
  Proceedings of the 13th Conference on Research in Computational Molecular Biology (RECOMB),
  Springer-Verlag Lecture Notes in Bioinformatics 5541, 512--532
• Eagu Kim and John Kececioglu (2008)
  "Learning scoring schemes for sequence alignment from partial examples",
  IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB) 5:4, 546--556
• Eagu Kim (2008)
  "Inverse parametric alignment for accurate biological sequence comparison",
  Ph.D. dissertation, Department of Computer Science, University of Arizona, Tucson, Arizona
• Eagu Kim and John Kececioglu (2007)
  "Inverse sequence alignment from partial examples",
  Proceedings of the 7th EATCS/ISCB Workshop on Algorithms in Bioinformatics (WABI),
  Springer-Verlag Lecture Notes in Bioinformatics 4645, 359--370
• John Kececioglu and Eagu Kim (2006)
  "Simple and fast inverse alignment",
  Proceedings of the 10th ACM Conference on Research in Computational Molecular Biology (RECOMB),
  Springer-Verlag Lecture Notes in Bioinformatics 3909, 441--455
• Eagu Kim (1998)
  "An efficient public-key cryptosystem based on Rabin's one-way function",
  M.S. thesis, Department of Computer Science, Yonsei University, Seoul, Korea Republic
• Daehun Nyang, Eagu Kim, and Jooseok Song (1997)
  "An interactive identification scheme based on quadratic residue problem",
  IEICE Transactions on Fundamentals of Electronics, Communications, and Computer Sciences E80-A:7, 1330--1335

Software

• Eagu Kim and John Kececioglu
  Gila: Software for inverse parametric sequence alignment
  http://inversealign.cs.arizona.edu