EBSeq User Interface

Downloads

Download source codes (v0.5)

Download sample data sets

EBSeq Interface Manual

Manual

Installation

Install EBSeq main package first

EBSeq Download Page



Install GTK+ and RGtk2 for graphical interface support

For more details, see EBSeq Interface manual. For mac users, if you encounter problems in running RGtk2, I found the following link to be useful:

https://gist.github.com/sebkopf/9405675

My R keeps crashing when calling RGtk2 after upgrade my mac OS X to Yosemite. It was fixed after following the these steps:
• Reinstall XQuartz
• (Re)install Macports and XCode
In terminal, run:
• export PATH=/opt/local/bin:/opt/local/sbin:$PATH
• sudo port selfupdate
• sudo port install pkgconfig
• sudo port install gtk2 +x11
In R,
• install.packages("RGtk2")
or (if binary version of RGtk2 is not available for your R version)
• install.packages("RGtk2", type="source")

References

• Ning Leng, John A. Dawson, James A. Thomson, Victor Ruotti, Anna I. Rissman, Bart M.G. Smits, Jill D. Haag, Michael N. Gould, Ron M. Stewart, and Christina Kendziorski, EBSeq: An empirical Bayes hierarchical model for inference in RNA-seq experiments. Bioinformatics, 2013 Paper

Older Versions

v0.1