Biostatistics & Medical Informatics 776
Computer Sciences 776
Advanced Bioinformatics (Spring 2015)

General Course Information
What's New
Syllabus, Readings, Lecture Notes
Schedule
Homework, Project, Exam Info
DNA

Tentative Course Schedule

Week Date Subject
1 1/20 Course Overview
1/22 Learning Motif Models
2 1/27 Learning Motif Models
1/29 Learning Motif Models
3 2/3 Learning CRM Models
2/5 Learning CRM Models
4 2/10 Learning CRM Models
2/12 Learning CRM Models
5 2/17 Gene Finding
2/19 Gene Finding
6 2/24 Gene Finding
2/26 Gene Finding
7 3/3 Gene Finding
3/5 Gene Finding
8 3/10 Midterm (in class)
3/12 RNA-Seq
9 3/17 Guest Lecture: Prof. Tony Gitter
3/19 RNA-SeqProject Proposal Due
10 3/24 RNA Secondary Structure and SCFGs
3/26 RNA Secondary Structure and SCFGs
Spring Break
11 4/7 RNA Secondary Structure and SCFGs
4/9 RNA Secondary Structure and SCFGs
12 4/14 Large-scale alignment
4/16 Large-scale alignment Project Progress Report Due
13 4/21 Large-scale alignment
4/23 Comparative Network Analysis
14 4/28 Genotype Analysis
4/30 Genotype Analysis
15 5/5 Protein Structure Prediction
5/7 Protein Structure Prediction
5/10 Final Exam
5/17 Project Report Due