Keles, Sunduz

Faculty
Sunduz Keles
Title: 
Professor, Department of Biostatistics & Medical Informatics and Department of Statistics
Room & Building: 
1246B MSC
Email: 

keles [at] biostat.wisc.edu

Phone: 
263-4533
Fax: 
265-7916
Education & Research: 

Ph.D., 2003, University of California, Berkeley

Research Interests
Statistical Genomics and Computational Biology; Statistical Computing; Statistical Inference with Censored Data.

Selected Publications
S. Keles, M. R. Segal (2002). Residual-based tree-structured survival analysis. Statistics in Medicine, 21: 313-326.

S. Keles, M. J. van der Laan, M. B. Eisen (2002). Identification of regulatory elements using a feature selection method. Bioinformatics, 18: 1167-1175.

S. Keles, M. J. van der Laan, S. Dudoit, B. Xing, M. B. Eisen (2003). Supervised detection of regulatory motifs in DNA sequences. Statistical Applications in Genetics and Molecular Biology, Vol. 2, No. 1, Article 5.

S. Dudoit, M. J. van der Laan, S. Keles, A. M. Molinaro, S. E. Sinisi, and S. L. Teng (2003). Loss-based estimation with cross-validation: applications to microarray data analysis and motif finding. SIGKDD Explorations, 5(2):37-49.

S. Keles, M. J. van der Laan, J. M. Robins (2004). Estimation of the bivariate survival function with right censored data structures. Handbook of Statistics, Volume 23: Advances in Survival Analysis, edited by N. Balakrishnan and C.R. Rao.

M. Miloslavsky, S.Keles, M. J. van der Laan, S. Butler (2004). Recurrent events analysis in the presence of time dependent covariates and dependent censoring. Journal of Royal Statistical Society Series B (Statistical Methodology), 66(1):239-257.

J. De Freitas, J. Kim, H. Poynton, T. Su, H. Wintz, T. Fox, P. Holman, A. Loguinov, S. Keles, M. J. van der Laan, and C. Vulpe (2004). Exploratory and confirmatory gene expression profiling of mac1. Journal of Biological Chemistry, 2(6):4450-4458.

M. J. van der Laan, S. Dudoit, S. Keles (2004). Asymptotic optimality of likelihood based cross-validation. Statistical Applications in Genetics and Molecular Biology, Vol. 3: No. 1, Article 4.

S. Keles, M. J. van der Laan, C. Vulpe (2004). Regulatory motif finding using logic regression. Bioinformatics, 20(16):2799-2811.

S. Keles, M.J. van der Laan, and S. Dudoit (2004). Asymptotically optimal model selection method for regression on censored outcomes. Bernoulli, 10 (6): 1011-1037.

H. Cinar, S. Keles and Y. Jin (2004). Identity of GABA motor neurons in C. elegans. To appear, Current Biology.

F. Lu, S. Keles, S. Wright, and Wahba, G. (2005) A Framework for Kernel Regularization With Application to Protein Clustering. PNAS, 102(35): 12332-12337.

H. Cinar, S. Keles, and Y. Jin (2005). Expression Profiling of GABAergic Motor Neurons in Caenorhabditis elegans. Current Biology, 15(4): 340 -346. (Journal website).

S. Keles, M. J. van der Laan, Sandrine Dudoit, and Simon E. Cawley (2006). Multiple Testing Methods for ChIP-Chip High Density Oligonucleotide Array Data. Journal of Computational Biology. 13(3):579-613.

Search PubMed for other health science publications by Sunduz Keles

Courses Taught
Stat 849: Theory and Application of Regression and Analysis of Variance-I (Fall 2004, 2005, 2006)
Stat 371: Introductory applied statistics for the life sciences (Spring 2005)
Stat 992: Statistical methods for biological sequence analysis (Spring 2006)

Additional phone: (608) 265-4384 (Statistics)

Summary: 

Statistical Genomics and Computational Biology; Statistical Computing; Statistical Inference with Censored Data.
Keles Research Group