Name | Group | Repeat | Allele Range | Ease | PCR | Forward Primer Sequence | Reverse Primer Sequence | Reference |
AHT141 | CFA5 | Di- | 104-112 | 2 | 4 | CCACAGGAAACCACAGGG | ACCGAGTGCTTAGTGTGTGTGT | Holmes et al, 1995 |
C05.377 | CFA5 | Di- | 105 | ND | 1 | ACGTGTTGATGTACATTCCTGC | CCACCCAGTCACACAATCAG | Ostrander et al, 1995 |
C05.414 | CFA5 | Di- | 156-167 | 2 | 3 | GCCCCTATTTTTTTTTTTCCC | TTGGGTTTCACACTCAGCAG | Ostrander et al, 1995 |
C05.771 | CFA5 | Di- | 150 | ND | 1 | GAGGAAGCCTATGGTAGCCA | CAAGACCTGAATTCCTTGTTCC | Mellersh et al, 1997 |
FH2140 | CFA5 | Tetra- | 152-171 | ND | 2 | GGGGAAGCCATTTTTAAAGC | TGACCCTCTGGCATCTAGGA | Francisco et al, 1996 |
GLUT4 | CFA5 | Di- | 187 | ND | 2 | CCGAGATCGAATCCCACTT | GGCTGCCCCTTATTTTTAT | Werner et al, 1997 |
M-CPH14 | CFA5 | Tri- | 231-247* | 2 | 1 | GAAAGACAATCCCTGAAATGC | ACCCCATTTATGAGAATCATGT | Fredholm & Wintero, 1995 |
M-CPH18 | CFA5 | Di- | 297-307* | 1 | 3 | CAGAGATACGTCTTGACACTAGCAGA | AGCAGACAGTGGGCCATGTT | Fredholm & Wintero, 1995 |
C09.173 | CFA9 | Di- | 101-115 | 1 | 3 | ATCCAGGTCTGGAATACCCC | TCCTTTGAATTAGCACTTGGC | Ostrander et al, 1993 |
C09.250 | CFA9 | Di- | 126-157 | 4 | 1 | TTAGTTAACCCAGCTCCCCA | TCACCCTGTTAGCTGCTCAA | Ostrander et al, 1993 |
C09.474 | CFA9 | Di- | 108-130 | 2 | 1 | TTAAGCCTTATTTTGTGTTGGG | TCCAGGAAGTGTCTGCAGG | Ostrander et al, 1995 |
C09.891 | CFA9 | Di- | 097-104 | 3 | 4 | CCAAGGGTTTCTGTTTTATC | CTTTGGATGTCATTCTGTC | by C. Gaiser |
C09.901 | CFA9 | Di- | 092-099 | 2 | 3 | GCTATCCACTGTCACCTT | GTAGTTCTGAGAAGCAAATACATA | by C. Gaiser |
FH2186 | CFA9 | Tetra- | 360-500 | ND | 2 | AGAGGGTCTACATGGATTCTGG | TAGAGTCTCAAACAATCCTGTGG | Mellersh et al, 1997 |
FH2248 | CFA9 | Tetra- | 390 | ND | 2 | CAAGAAAAAGATCAAAGCAAACA | CCCAGTGTTGAACCACCTCT | Mellersh et al, 1997 |
FH2263 | CFA9 | Tetra- | 217 | ND | 2 | CATGTAGAGTGATTAGTTGGTCTTT | CTGAATATCCTCTGCCCTTC | Mellersh et al, 1997 |
GALK1 | CFA9 | Di- | 186 | ND | 2 | AATTGAGTTTTTGGGGTGCCTGAG | CAATGAGCTGAGATGGTGTAGTAG | Werner et al, 1997 |
PEZ11 | CFA9 | Tetra- | 121-173 | 1 | 1 | ATTCTCTGCCTCTCCCTTTG | TGTGGATAATCTCTTCTGTC | by J. Halverson |
RARA | CFA9 | Di- | 130 | ND | 2 | CAGGGCAGGGCGGGTCAT | GAAGATCTGAAGAACTTAGAGGAG | Werner et al, 1997 |
THRA1 | CFA9 | Di- | 180 | ND | 2 | AGCAGCTCCCCTTCACAC | CCCGCCGGTTCCCCCACTAT | Werner et al, 1997 |
TK1 | CFA9 | Di- | 123 | ND | 2 | CTTCCCCCTCTGCCTGTGTCTCT | ATCGCTAATTCATGCCCTTGTGGT | Werner et al, 1997 |
C20.253 | CFA20 | Di- | 101-114 | 1 | 3 | AATGGCAGGATTTTCTTTTGC | ATCTTTGGACGAATGGATAAGG | Ostrander et al, 1993 |
C20.374 | CFA20 | Di- | 187-204 | 4 | 1 | AGGAGGACAGAAAGACAGAAGG | ATGGATGTATTGTGAGGGTGG | Ostrander et al, 1995 |
C20.446 | CFA20 | Di- | 183-202 | 3 | 1 | CTGGGTATTTACCCAAAGAAAA | TTTCATTCCTTTTAATGGCTGA | Ostrander et al, 1995 |
C20.610 | CFA20 | Di- | 210-216 | 1 | 3 | CCTTTCCACATTACATAGACAG | GGAGAGTCTGCTTCAGGATTC | Ostrander et al, 1995 |
C20.622 | CFA20 | Di- | 210-225 | 2 | 3 | CTTGTGCAATCATCATCTTGA | CCCGAGGTACCTATGGCT | Ostrander et al, 1995 |
FH2148 | CFA20 | Tetra- | 480 | ND | 2 | GGCAGAAATGGAGAGTATCAGG | GTCCCAGGATGGAGTCCC | Francisco et al, 1996 |
FH2158 | CFA20 | Tetra- | 261-341 | ND | 2 | ATGGCCACATCACCCTAGTC | CTCTCTCTGCATCTCTCATGAA | Francisco et al, 1996 |
FH2365 | CFA20 | Tetra- | 500 | ND | 2 | TTTAATGTGCATATGACTCCCC | TTGGTGAAGTGTCTGCCTTC | Mellersh et al, 1997 |
M-CPH16 | CFA20 | Di- | 190-220* | 3 | 4 | CTACACCAGTTAGGGAATCTAGC | CAGATTCAAATCCACTCTCAGAC | Fredholm & Wintero, 1995 |
AHT117 | L1 | Di- | 082-088 | 3 | 4 | GCCTGCGTGGTACACACACA | GTTTACCTGCCATCATCTCA | Holmes et al, 1995 |
AHT138 | L1 | Di- | 101-115 | 2 | 3 | ACTTGGACCAGACAAGGGTG | GGATTTGCCTATGCACTACACA | Holmes et al, 1995 |
CXX.164 | L1 | Di- | 144-171 | 2 | 1 | CTTCTCCCTCTGCCTGTGTC | GGCATGTGCTTTAAAATTTCT | Ostrander et al, 1993 |
CXX.236 | L1 | Di- | 270-278 | 2 | 1 | GAGCCTGCTTCTCCCTCTG | TCTTTATTGTTACCATTTGCCA | Ostrander et al, 1993 |
CXX.246 | L1 | Di- | 123-131 | 1 | 4 | GACTTCATTCATCCATTCATGA | GGATCGAGTCCAACGTGG | Ostrander et al, 1993 |
CXX.251 | L1 | Di- | 138-153 | 3 | 3 | TACCACTGTCATTTTTCCATGC | AAGAGGATACCGGTGGCAG | Ostrander et al, 1993 |
CXX.424 | L1 | Di- | 176-195 | 2 | 3 | AGCTTAGCTTACTGCCCTGG | TCCTTTGGTTTTTAGCAGGG | Ostrander et al, 1995 |
CXX.643 | L1 | Di- | 180 | ND | 1 | AAGTCTCCTGACGATGAACACA | CCTAGAGTCTGCTGGAGATTGC | Ostrander et al, 1995 |
CXX.673 | L1 | Di- | 165 | ND | 1 | CCACCACTTACATAAACATGGC | TTCCAGACTGCTGCCTCC | Ostrander et al, 1995 |
FH2016 | L1 | Tetra- | 282-322 | 3 | 2 | CATTTTTAAGGATGGAGACAGC | AACAGTGTCCCATGGCCTAC | Francisco et al, 1996 |
FH2294 | L1 | Tetra- | 222-235 | ND | 2 | GGGTCCTGGGATCAAGCC | TTAGTAAAGAGACAGCTGATTG | Mellersh et al, 1997 |
FH2309 | L1 | Tetra- | 330-430 | ND | 2 | GACTGAGTTCTTTCAGCACAGTG | GGCAGCCTTATTATTCATGGA | Mellersh et al, 1997 |
FH2313 | L1 | Tetra- | 270 | ND | 2 | AGTAGAAGAGGCCACGCAAA | CACGAAGAAAGCCATGGTTT | Mellersh et al, 1997 |
FH2326 | L1 | Tetra- | 250 | ND | 2 | GAATCCCCAATGTACATGGC | CAGCCATCCAGGAAATCG | Mellersh et al, 1997 |
PGKAM | L1 | ND | 150 | ND | 2 | AATATTTTTCATGTATAGCACTCC | ATGCTCCCTTCAGTTCTTTCC | Deschenes et al, 1994 |
AHT111 | L2 | Di- | 074-093 | 4 | 4 | CCATACCCAGGATAGTTGAT | CCATCCTGAGGCTAGCTGTG | Holmes et al, 1993b |
AHT132 | L2 | Di- | 170-184 | 3 | 3 | CGTCCCTATGTTTAACTACA | TTGTTGCAAATGGCAAGATT | by N. Holmes |
CXX.30 | L2 | Di- | 149-161 | 3 | 3 | GCCTTTTAGGGAGCTTTCTTT | GAGTCTGCTTTTCTCCTTCCC | Ostrander et al, 1993 |
CXX.342 | L2 | Di- | 184-201 | 4 | 1 | TCTTTGAAATGAAATGGGCC | GCTCTCATCCCTGTGAAAGC | by E. Ostrander |
CXX.438 | L2 | Di- | 261-292 | 2 | 1 | CCCCAACCTCAGTTAACCAA | AGCTTGCAGCCCATTTTG | Ostrander et al, 1995 |
CXX.466 | L2 | Di- | 149-166 | 2 | 1 | TCTGGATTGTGGTCACAACC | ACTGGACACTTCTTTTCAGACG | Ostrander et al, 1995 |
CXX.609 | L2 | Di- | 190 | ND | 1 | CCACAATTTAATTTTTTTCCCA | ACTGCTGCTAACAGGTCTTGG | Ostrander et al, 1995 |
CXX.864.A | L2 | Di- | 244-255 | 4 | 1 | TGACTGTAGATTTGATTTGAA | AGAAACTAGGAGAATAAAGGTT | by C. Gaiser |
CXX.894 | L2 | Di- | 141-165 | 2 | 3 | TCAGCATCTAGAAAATTAGGT | ACTCATTTTCTCTTATTCTGCAG | by C. Gaiser |
FH2062 | L2 | Tetra- | 126-154 | 2 | 2 | GGCTTCTGGAGACAGGCAT | CAGAACGCTGTCTAGCCCTT | Francisco et al, 1996 |
FH2087U | L2 | Tetra- | 346-355 | ND | 2 | CTGCCACATTCACTGATGC | CAACTCCCTCCCTCATTTCA | Francisco et al, 1996 |
FH2132 | L2 | Tetra- | 260-320 | ND | 2 | CACTGGGAGTGGAGACTGCT | TGCACAGCCAACTAGAGGTG | Francisco et al, 1996 |
FH2225 | L2 | Tetra- | 244-260 | ND | 2 | TCTGCCCATTTCATCTTGC | TGTGCTCAGCATAGAGTCTGC | Mellersh et al, 1997 |
FH2237 | L2 | Tetra- | 590 | ND | 2 | AGGCTGACCTTATCTTTCAACTG | CAACACAGATGAAACTGGAAGG | Mellersh et al, 1997 |
FH2274 | L2 | Tetra- | 274-326 | ND | 2 | TCACCCTCATCCATCTCAGA | ACGCCAGACACAAAAAGACA | Mellersh et al, 1997 |
M-CPH7 | L2 | Di- | 202-218* | 2 | 3 | ACACAACTTTCCATAATACTTCCCA | ATCAATGCTCTCCTCCCCAG | Fredholm & Wintero, 1995 |
CXX.279 | L3 | Di- | 117-133 | 1 | 3 | TGCTCAATGAAATAAGCCAGG | GGCGACCTTCATTCTCTGAC | Ostrander et al, 1993 |
CXX.468 | L3 | Di- | 186-203 | 4 | 4 | AAGAGCATACCCATGATGTTCA | TAAAAGAGGGTGAAAAGATGCC | Ostrander et al, 1995 |
CXX.763 | L3 | Di- | 150 | ND | 1 | CAGCCCACTTCCTGGAAATA | GACCAGTGTGCATTAAGCC | Mellersh et al, 1997 |
CXX.768 | L3 | Di- | 210 | ND | 1 | ACGGTGACAGGTGTCAAGG | ATGCATCGTCCTCTCCTCC | Mellersh et al, 1997 |
FH2109 | L3 | Tetra- | 151-176 | ND | 2 | CAATCCAGCAACCCTCATCT | CAGGGATTGAGTCCCACATC | Francisco et al, 1996 |
FH2538 | L3 | Tetra- | 250 | ND | 2 | CAGAGACAAAGGCTTCCCTG | CCCCTCTACTCCTCCTGCTT | Neff et al, 1998 |
PEZ19 | L3 | Tetra- | 186-208 | 2 | 4 | GACTCATGATGTTGTGTATC | TTTGCTCAGTGCTAAGTCTC | by J. Halverson |
CXX.445 | L4 | Di- | 195 | ND | 1 | TCTTTGGTAAAGTCTCCATGGG | GGGTGTGAAAACAGCCAACT | Ostrander et al, 1995 |
CXX.629 | L4 | Di- | 170 | ND | 1 | TTGATTCCTGGACCCAATTC | GACCTCTAAACTGGAGGGTGG | Ostrander et al, 1995 |
CXX.864.B | L4 | Di- | 259-274 | 4 | 1 | TGACTGTAGATTTGATTTGAA | AGAAACTAGGAGAATAAAGGTT | by C. Gaiser |
CXX.877 | L4 | Di- | 173-189 | 3 | 3 | ATAAGAGGAAAACATTCCG | TAAGGTTAGTTACCACATCTATC | by C. Gaiser |
CXX.895 | L4 | Di- | 133-141 | 3 | 3 | CCCTACCTCTGTTCATGT | TATCTGCTTTGTAGGTAATCC | by C. Gaiser |
FH2107 | L4 | Tetra- | 366-389 | ND | 2 | CATCATTATTGGGCTCCATG | CTGTGTCATCATTAAGCTAAGTCCT | Francisco et al, 1996 |
FH2131 | L4 | Tetra- | 361-401 | ND | 2 | ATGAAGCCTCACGCCAAG | TGATCACACTCATCTCCCCA | Francisco et al, 1996 |
FH2137 | L4 | Tetra- | 140-210 | ND | 2 | GCAGTCCCTTATTCCAACATG | CCCCAAGTTTTGCATCTGTT | Francisco et al, 1996 |
FH2145 | L4 | Tetra- | 280 | ND | 2 | CAGTCGGGTTTAGGGTCTCA | CAGTCGGGTTTAGGGTCTCA | Francisco et al, 1996 |
FH2146 | L4 | Tetra- | 378 | ND | 2 | GGGCTCCACTAAGCACTATCT | TACCATAACAAAGGCAAGGC | Francisco et al, 1996 |
FH2181 | L4 | Tetra- | 475 | ND | 2 | ATTGCAGGACTATAGACAAAAACA | AAATTCTTCCTTGAAATCTGTT | Mellersh et al, 1997 |
FH2302 | L4 | Tetra- | 300-341 | ND | 2 | AGTATTTTCACAATTGCTCAGTGC | TTTTGGCCTATCTTAAGAGGTCC | Mellersh et al, 1997 |
FH2316 | L4 | Tetra- | 420 | ND | 2 | AAATGGCCTGACGAATATGC | GTGCCATGGCATATGGTAAA | Mellersh et al, 1997 |
FH2320 | L4 | Tetra- | 240 | ND | 2 | TTAGTTAGGGTTTTGGTTTGGG | AGCCACTGCAATAAGGCAAG | Mellersh et al, 1997 |
M-CPH19 | L4 | Di- | 195-209* | 3 | 3 | AGTCCTATTGTGAAATTCAGCC | CGTATTTTAGGCAATGGCAC | Fredholm & Wintero, 1995 |
PEZ12 | L4 | Tetra- | 266-313 | 2 | 4 | GTAGATTAGATCTCAGGCAG | TAGGTCCTGGTAGGGTGTGG | by J. Halverson |
UOR4107 | L4 | Tri- | 220-232 | 2 | 4 | TGACCCTTCTACAACTCGGG | TGTGACCAGTCACTGCTTCC | by D.R. Meeks-Wagner |
CXX.13 | L5 | Di- | 088-103 | 3 | 4 | GAACCTGACCACTCACTC | ACCATCTCTGAGGACAAG | by C. Gaiser |
CXX.620 | L5 | Di- | 189-199 | 2 | 1 | AGCAGAGAGGGATTGCAGG | CAGGGAAAAATAGCAAAGAAAA | Ostrander et al, 1995 |
CXX.767 | L5 | Di- | 150 | ND | 1 | GGGGTCCTGGAATCAAATCT | AGCCATTCTGACTAATGTTTGG | Mellersh et al, 1997 |
FH2174 | L5 | Tetra- | 201 | ND | 2 | CACCTGTTCTCATAGAATGCAG | AAGTCTCGCCTCGGGGTC | Francisco et al, 1996 |
FH2201 | L5 | Tetra- | 154 | ND | 2 | ATCAACAATGCATGCCACAT | GAGAACAAATAAATGCAAGCCC | Francisco et al, 1996 |
FH2226 | L5 | Tetra- | 189-260 | ND | 2 | GGACTACCCCATTGCATTTG | GAATCGAGTCCCATATCGGG | Mellersh et al, 1997 |
FH2301 | L5 | Tetra- | 225 | ND | 2 | GCTTTGGAATGTCTCCTGGA | GCTTACTATAGCCTGGCTGTGG | Mellersh et al, 1997 |
M-CPH20 | L5 | Di- | 133-153* | 3 | 3 | GGTTCCTGGGCCCAATTTCA | TGGTGTGGTGAATCGCTTGTTG | Fredholm & Wintero, 1995 |
PEZ1 | L5 | Di- | 095-133 | 2 | 4 | GGCTGTCACTTTTCCCTTTC | CACCACAATCTCTCTCATAAATAC | by J. Halverson |
PEZ22 | L5 | Tetra- | 171-189 | 2 | 1 | TGGGGAGATCTACAGACCAC | CTAATGTGTCTCTCAAGCCG | by J. Halverson |
TETRA | L5 | Tetra- | 104-130 | 1 | 1 | CACCACAATCTCTCTCATAAATAC | GGCTGTCACTTTTCCCTTTC | by N. Holmes |
CXX.123 | L6 | Di- | 126-151 | 3 | 1 | AACTGGCCAAACATAAACACG | TTCATTAACCCTTTGCCCTG | Ostrander et al, 1993 |
CXX.277 | L6 | Di- | 145 | ND | 1 | ACACATTTGTGTGCTTGTCTTG | TTGTATGGAGGTGGGGAGAG | Ostrander et al, 1993 |
CXX.745 | L6 | Di- | 105 | ND | 1 | TTTATGGTCTCCATGAGGGC | TCCCTGCATTTCCTTATTTCA | Mellersh et al, 1997 |
FH2001 | L6 | Tetra- | 110-170 | ND | 2 | TCCTCCTCTTCTTTCCATTGG | TGAACAGAGTTAAGGATAGACACG | Francisco et al, 1996 |
FH2227 | L6 | Tetra- | 565 | ND | 2 | ATCCCAGAACAGAAGAGAGTCC | CCTTTGCCTTTGGAATCAAA | Mellersh et al, 1997 |
FH2283 | L6 | Tetra- | 185 | ND | 2 | TCACCCAGCTTGTGCTATCTC | GCTGTAAGACAGGACACAGGC | Mellersh et al, 1997 |
FH2325 | L6 | Tetra- | 450 | ND | 2 | TAAGTCTCAGAGACCACTCATTCG | GCAGAGTCAGCTTGGGATTC | Mellersh et al, 1997 |
FH2508 | L6 | Tetra- | 190 | ND | 2 | GAACAACTGAGTGTCCACATG | TTCTTCCATGTTATCTTCCAGG | Neff et al, 1998 |
CXX.365 | L7 | Di- | 175 | ND | 1 | TGGGGATGAAAATGCCTCTA | TATGGATTCCTGATTGGAATCA | Ostrander et al, 1995 |
CXX.391 | L7 | Di- | 150 | ND | 1 | ATTTGAAGTCCGTGGCTCC | GAAACAAAGAGGCAGCGATC | Ostrander et al, 1995 |
CXX.758 | L7 | Di- | 480 | ND | 1 | AAGCATCCAGAATCCCTGG | GTTGATTGGGAGATAATCCACA | Mellersh et al, 1997 |
CXX.900 | L7 | Di- | 121-132 | 3 | 3 | TTGGACTTCTAATTTTTCATT | CAACTGACTAAATCTCCTAATG | by C. Gaiser |
FH2348 | L7 | Tetra- | 430 | ND | 2 | GCATGCAAAGGTGTTAATTGG | ACACAAGGAAGCTTTGGGG | Mellersh et al, 1997 |
AHT110 | L8 | Di- | 115-126 | 3 | 4 | CCTGGCTGCTGGGACACACC | TCTCCCTGTGCCTTTTATTA | Holmes et al, 1993b |
AHT116 | L8 | Di- | 227-244 | 2 | 3 | ATTCAGTCAATATGCAGGCT | CTATGCTGTGAGGCTTTCCA | Holmes et al, 1998 |
CO4107 | L8 | Di- | 165 | ND | 2 | TCAGCAACTATACATTTAAGAGCA | CTGTCCCATCTAAAGGATAGG | Yuzbasiyan-Gurkan et al, 1997 |
CXX.16 | L8 | Di- | 178-186 | 4 | 1 | TTCTTGCTTCTTGAAGTAAGCC | GAGTTCCAGATCGAGTCCCA | Ostrander et al, 1993 |
CXX.404 | L8 | Di- | 152-168 | 2 | 3 | GATTGATGACCTAGATATGCCC | CCATTACTGGGGAAGCAGAG | Ostrander et al, 1995 |
CXX.602 | L8 | Di- | 168-192 | 3 | 3 | AGAATGAAAACGGAGCAGCA | CGATATTTTTCTCTCCCACCC | Ostrander et al, 1995 |
CXX.606 | L8 | Di- | 164-178 | 1 | 1 | AAAGGCTGTGGAATTAATGTGA | AATTCCTTGCTTGCTATCAAAA | Ostrander et al, 1995 |
CXX.769 | L8 | Di- | 100 | ND | 1 | CCATTCATGTTGTTGCAGATG | TGCTCCCCTGTGTTCTGAG | Mellersh et al, 1997 |
CXX.781 | L8 | Di- | 305 | ND | 1 | ACCTCCAAGATGGCTCTTGA | ACGTCGAGCTCCTGGCAT | Mellersh et al, 1997 |
CXX.865 | L8 | Di- | 127-156 | 2 | 4 | AGTGTATGTAAGCCTGGAG | TAACTGATGTTATCACTCTCTGC | by C. Gaiser |
FH2293 | L8 | Di- | 222-284 | ND | 2 | GAATGCCCTTCACCTTGAAA | AGGAAAAGGAGAGATGATGCC | Mellersh et al, 1997 |
FH2339 | L8 | Tetra- | 600 | ND | 2 | TCCTTATGATAGTTTCCCTGTCTC | CAACTAACACACCCATCACTTC | Mellersh et al, 1997 |
AHT131 | L12 | Di- | 104-117 | 3 | 4 | GAAACTGAATCAGCAAATGACC | TTCTCCCTCTGCCTGTGTCT | Holmes et al, 1995 |
CXX.147 | L12 | Di- | 180 | ND | 1 | CCATGGGAAACCACTTGC | ACTTCATCATGTCTGGAAGCG | Ostrander et al, 1993 |
CXX.876 | L12 | Di- | 098-120 | 2 | 3 | CATGGATTCTGCATTTAC | GGTGGAGAACATACAAGAATATAC | by C. Gaiser |
FH2155 | L12 | Tetra- | 457 | ND | 2 | TGTAGATGATGGAGACATTGGG | AGGCAAATATGCCAAGGATG | Francisco et al, 1996 |
FH2175 | L12 | Tetra- | 251 | ND | 2 | TTCATTGATTTCTCCATTGGC | AGGACTCTAAAAACTTGCCTCC | Francisco et al, 1996 |
CXX.646 | L13 | Di- | 176-192 | 3 | 1 | TGGGATTCCAAAATGTTTTT | TCCCAGGATTAAGTCCCACA | Ostrander et al, 1995 |
FH2199 | L13 | Tetra- | 270-420 | ND | 2 | GCTGAGCACTGGGTATTGTATG | TGTTACAAATTAATGTGAAATGGC | Mellersh et al, 1997 |
FH2239 | L13 | Tetra- | 580 | ND | 2 | CCCATTAGCAAATGACTGGG | GAAGTGACTGAGTACCTGAAAT | Mellersh et al, 1997 |
AHT130 | L14 | Di- | 105-124 | 4 | 1 | CCTCTCCTGGTAATTGCTGC | TGGAACACTGGTCCCCAG | Holmes et al, 1995 |
AHT134 | L14 | Di- | 122-139 | 2 | 4 | CAGTTCTAACACCCAGGAGTCC | GCTGGCTGGGAAAAATGA | Holmes et al, 1995 |
CXX.156 | L14 | Di- | 131-142 | 3 | 3 | ACAACCAACACACACAAAAACC | TCTTATCCCAGTGGCATTAGG | Ostrander et al, 1993 |
CXX.460 | L14 | Di- | 124-144 | 1 | 1 | CTTCCCATTATAGCCCTGTCC | GGTGTCAGGAAAATGAGACCA | Ostrander et al, 1995 |
FH2356 | L14 | Tetra- | 235 | ND | 2 | CTTGCATTCCCGCTCTCACT | TCCTGAAATAGCTCCAGCGC | Mellersh et al, 1997 |
WILMS-TF | L14 | Tetra- | 277-301 | 2 | 3 | CCCAATCTCCAGAGATTTTCC | CCAGTCTCAGCTGTGTCCAA | Shibuya et al, 1996 |
AHT140 | L15 | Di- | 100-118 | 1 | 4 | GTCGTGCATGGGAAAATTCT | TATGGTCCAGGTGTGAACA | Holmes et al, 1998 |
CXX.213 | L15 | Di- | 135-167 | 3 | 1 | AATATGGGAGAGGAGAAGAGGG | ATGCTTCCTGGTAAGCAATCA | Ostrander et al, 1993 |
FH2006 | L15 | Tetra- | 187-205 | ND | 2 | TGGGGGCGTTAAGAGTAATG | CTAGGCCTAAACCCCTGAGC | Francisco et al, 1996 |
FH2087L | L15 | Tetra- | 230-246 | ND | 2 | CTGCCACATTCACTGATGC | CAACTCCCTCCCTCATTTCA | Francisco et al, 1996 |
FH2141 | L15 | Tetra- | 550 | ND | 2 | CAATGCTCCTTAGATTGCAGG | ACCCAAGGAAACTAGAAGGAAG | Francisco et al, 1996 |
FH2318 | L15 | Tetra- | 300 | ND | 2 | CAAGTCTGAGATGAGGCTTGG | TGAGTTCAAATGCCAGCAATC | Mellersh et al, 1997 |
FH2324 | L15 | Tetra- | 250 | ND | 2 | AGCTCTATGAAAGGTGATTGCC | AGACAGCCATACAAATGAGAAT | Mellersh et al, 1997 |
AHT142 | L16 | Di- | 181-202 | 1 | 3 | GGTGAGGCACTTAGCTTTTC | AGAAATTACCCAAACCTAGCCC | Holmes et al, 1998 |
CXX.373 | L16 | Di- | 200 | ND | 1 | TATTTAAAAAATCCCAGGCACA | AGCATCAATTAGATGTCAGCG | Ostrander et al, 1995 |
CXX.410 | L16 | Di- | 096-125 | 2 | 3 | GAGGAAAACCAAGTGATTTTGG | ACCTGCAAGTGACCCTCTCT | Ostrander et al, 1995 |
CXX.618 | L16 | Di- | 188-206 | 1 | 1 | CAACCCAGGGTGGAAGC | TAGCAAGAAAATGTGCCCA | Ostrander et al, 1995 |
FH2138 | L16 | Tetra- | 268-280 | ND | 2 | AATGTGCCCAACATTCCACT | AAGTCCCATGTCAGGCTCC | Francisco et al, 1996 |
FH2144 | L16 | Tetra- | 289 | ND | 2 | GTGGCTCTTTTTGATGAGGG | CCTGGGTGGTTCAGTCAGTT | Francisco et al, 1996 |
FH2149 | L16 | Tetra- | 308 | ND | 2 | CATGGAGCCTGCTTATCCAT | AACCCCTTAGCCACCCAG | Francisco et al, 1996 |
M-CPH12 | L16 | Di- | 234-250* | 3 | 3 | GGCATTACTTGGAGGGAGGAA | GATGATTCCTATGCTTCTTTGAG | Fredholm & Wintero, 1995 |
PEZ9 | L16 | Tetra- | 109-211 | 2 | 1 | ACAGTTATCCAACAATGAGG | ACGCCTGAACTTAATCCTGG | by J. Halverson |
UOR4101 | L16 | Tri- | 156-168 | 2 | 4 | CCTACCATGGCAAGTGCC | TTCACGGTTGTGAGATGGAG | by D.R. Meeks-Wagner |
CXX.176 | L17 | Di- | 187-203 | 1 | 3 | TCAGGCTCTCCAGAGACACA | TTGCCAATAGCAGACTGTGG | Ostrander et al, 1995 |
CXX.434 | L17 | Di- | 098-111 | 3 | 3 | ATAGTTAAGGGCCTTGTGTACG | ACAAGCACCTCCCCTTCC | Ostrander et al, 1995 |
FH2208 | L17 | Tetra- | 424-476 | ND | 2 | ATGTCTGGCTCTGCGCTC | AAACACTCCTGGGAGAGCAA | Mellersh et al, 1997 |
LEI006 | L17 | Di- | 075-079 | 1 | 3 | ATAGCCTGGAATATCCACTTTAGC | TTAGCTTTCCAGACTTCATAGAGG | Holmes et al, 1993b |
FH2165 | L18 | Tetra- | 326 | ND | 2 | GGATGGAGTCCCACATCG | CCTCACCCCAAATTCTTTAGC | Francisco et al, 1996 |
FH2361 | L18 | Tetra- | 370 | ND | 2 | GCTTGGAAGGTGAGACTGAATG | AGCACTTAGAATGTACCAGGCA | Mellersh et al, 1997 |
CXX.188 | L19 | Di- | 128-132 | 3 | 1 | TCTGTGACTTTCTCTCAAATGG | TCCCTCTCCCTTCCTCTCTC | Ostrander et al, 1995 |
CXX.2 | L19 | Di- | 207-220 | 2 | 1 | TATTAAATCCCAGTCACCACCC | AGGTCCCAGACCGAGTCC | Ostrander et al, 1993 |
CXX.883 | L19 | Di- | 164-189 | 2 | 1 | ACAGGGAAAGGACAAATA | AATTAATTTTAGTTTGCCAGG | by C. Gaiser |
FH2177 | L19 | Tetra- | 470 | ND | 2 | CCTCAGAAAATGTATGCTGGG | TATAGGGCATCTGGGTGGC | Mellersh et al, 1997 |
FH2328 | L19 | Tetra- | 190 | ND | 2 | ACCAGGTAGTTTTCAGAAATGC | AGTTATGGGACTTGAGGCTG | Mellersh et al, 1997 |
FH2364 | L19 | Tetra- | 510 | ND | 2 | TTTCTGTCGAAATCAATGTTTAGG | CCCTTCAGGCTCAAACACTC | Mellersh et al, 1997 |
AHT139 | L20 | Di- | 146-160 | 1 | 4 | TCTGGTGTGTTTGAGTGAGC | ATGCAGCTCCTGGCACAG | Holmes et al, 1995 |
CXX.608 | L20 | Di- | 132-149 | 2 | 1 | TATTGTAAGTCTTCCTTGAC | TCTACCGTCTACAACAAAAGGG | Ostrander et al, 1995 |
FH2017 | L20 | Tetra- | 265-275 | ND | 2 | AGCCTCTATAATCACGTGAGCC | CCCAGTACCACCTTCAGGAA | Francisco et al, 1996 |
FH2171 | L20 | Tetra- | 650 | ND | 2 | CTATGCCACTCTAGATTCTGGG | ACACATGCAGATAGGTCCTGG | Francisco et al, 1996 |
FH2278 | L20 | Tetra- | 310-330 | ND | 2 | TCCACTCTGAGCATGGAGC | GCCCAGTTTTCCCAGTAACA | Mellersh et al, 1997 |
FH2295 | L20 | Tetra- | 390 | ND | 2 | TCTCGGGGATAGTGTTATAACTCC | GTCAGGAAAAGGACATTTGACC | Mellersh et al, 1997 |
FH2360 | L20 | Tetra- | 315 | ND | 2 | CATTGATGCTGAATTTGACTTC | TTACACACACTATTTTGCTGGT | Mellersh et al, 1997 |
M-CPH4 | L20 | Di- | 173-195* | 2 | 1 | ACTGGAGATGAAAACTGAAGATTATA | TTACAGGGGAAAGCCTCATT | Fredholm & Wintero, 1995 |
UOR0442 | L20 | Tri- | 224-240 | 1 | 4 | TCAGCTGGTTAATGATAGGTGG | ATATTCCTTTGCTCTGAGACGC | by D.R. Meeks-Wagner |
AHT103 | L21 | Di- | 074-087 | 3 | 1 | GGAAACTCAGTTATTTTACA | GCCCTAGAACTTCACACACA | Holmes et al, 1995 |
FH2097 | L21 | Tetra- | 260-310 | 3 | 2 | CAATGTCGAATTCCATGGTG | ATGGAGCAAGATGTGTTTGTG | Francisco et al, 1996 |
FH2142 | L21 | Tetra- | 294 | ND | 2 | GCTCACATGTGTGCATGC | GCACTCCATGAGGCAGGT | Francisco et al, 1996 |
PDEA | L21 | Di- | 135 | ND | 2 | TAAAGACAGCAGAGCTGAGGG | GGGGCTGCTAATAACCCATT | Neff et al, 1998 |
PEZ13 | L21 | Tetra- | 170-234 | 3 | 1 | AGTCTGGTGATTTAATTCGG | GTCTAGTCCCCAGTCTAGTTCACTGCCC | by J. Halverson |
PEZ17 | L21 | Tetra- | 199-227 | 1 | 4 | CTAAGGGACTGAACTTCTCC | GTGGAACCTGCTTAAGATTC | by J. Halverson |
AHT125 | L22 | Di- | 088-111 | 3 | 4 | CCACCAGTGTGCCCATCTC | ATCAAAGTCATGAAATTCCGTG | Holmes et al, 1994 |
FH2010 | L22 | Tetra- | 220-247 | 2 | 3 | AAATGGAACAGTTGAGCATGC | CCCCTTACAGCTTCATTTTCC | Francisco et al, 1996 |
FH2079 | L22 | Tetra- | 261-300 | 2 | 4 | CAGCCGAGCACATGGTTT | ATTGATTCTGATATGCCCAGC | Francisco et al, 1996 |
FH2159 | L22 | Tetra- | 182 | ND | 2 | GAATCCCACATCGGGCTC | ATTAAGTTTTGAAAGCCAGGTAAG | Francisco et al, 1996 |
FH2168 | L22 | Tetra- | 213 | ND | 2 | GCAAATTACTTACTTCACTATGCC | TTGCAAGACTTCAACATGGC | Francisco et al, 1996 |
FH2261 | L22 | Tetra- | 190 | ND | 2 | TTAAAACAATGCCTAGACAATGC | GCCTCTCCCATTCATGCTAA | Mellersh et al, 1997 |
FH2281 | L22 | Tetra- | 420 | ND | 2 | TGCTGGCACGTATACCAAGA | AGTGTGATGCAGAGGTTCCC | Mellersh et al, 1997 |
AHT124 | L23 | Di- | 130-136 | 1 | 3 | GAATCAGCTAAGAACAGACCTG | GCCTCCCTGCATATATATACAC | Holmes et al, 1994 |
FH2206 | L23 | Tetra- | 540 | ND | 2 | CCTATCTAATTTATTGTTCAGCAAG | TACTGGAAGTAATTCTCCTCTC | Mellersh et al, 1997 |
FH2279 | L23 | Tetra- | 240 | ND | 2 | CGCCAGCTAAACTATGGGTC | CATTGGGCTCCATTCTGG | Mellersh et al, 1997 |
M-CPH8 | L23 | Di- | 239-255* | 2 | 3 | AGGCTCACAATCCCTCTCATA | TAGATTTGATACCTCCCTGAGTCC | Fredholm & Wintero, 1995 |
PEZ3 | L23 | Tetra- | 095-153 | 3 | 1 | CACTTCTCATACCCAGACTC | CAATATGTCAACTATACTTC | by J. Halverson |
CXX.204 | L24 | Di- | 199-218 | 2 | 3 | CGAGAGCAACATAGGCATGA | CAAAGTGCTGTGGCAGGTC | Ostrander et al, 1993 |
FH2050 | L24 | Tetra- | 249-264 | 1 | 3 | GTATCGAGTCCCGCGTTG | CTGGGAGGTGCAAGGTTTAA | Francisco et al, 1996 |
FH2290 | L24 | Tetra- | 590 | ND | 2 | GGCTTGAATGATCTAGCCCA | TGGCTACTGTCGCTATCACCT | Mellersh et al, 1997 |
FH2305 | L24 | Tetra- | 196-209 | ND | 2 | TCATTGTCTCCCTTTCCCAG | AAGCAGGACATTCATAGCAGTG | Mellersh et al, 1997 |
CXX.390.2 | L25 | Di- | 304-321 | 4 | 1 | CCTCAGTAATGTTAGCGACTGC | AAGTCCCACATCAGGCTCC | Ostrander et al, 1995* |
CXX.866 | L25 | Di- | 242-256 | 2 | 1 | TGTCATAATAGTTGGAATGAC | TTAGAGCTTACTCATGATATCTG | by C. Gaiser |
FH2060 | L25 | Tetra- | 221-233 | ND | 2 | GTTTTGAGGAAGCCTTGCTG | GAAGGAAGGGGCCAGTATTC | Francisco et al, 1996 |
FH2189 | L25 | Tetra- | 259-280 | ND | 2 | CCATAAGATACTCAGAAACATGCA | CACAGTGAGGAGGGGTGG | Mellersh et al, 1997 |
FH2258 | L25 | Tetra- | 374-381 | ND | 2 | AAAAAGGCACATATGCTGGG | ATGGTCATCAACTGCTTAGCC | Mellersh et al, 1997 |
PEZ10 | L25 | Tetra- | 282-302 | 3 | 1 | CTTCATTGAAGTATCTATCC | CCTGCCTTTGTAAATGTAAG | by J. Halverson |
AHT127 | L26 | Di- | 170-187 | 2 | 4 | GGATCAAATCCCACGTCG | CAAAATTCTACACTCTTCCCCG | Holmes et al, 1995 |
CXX.452 | L26 | Di- | 170-177 | 3 | 3 | ATTGCCAAATGCTAAACCTCA | TTTTCTTGGGATTAAGAGTGGA | Ostrander et al, 1995 |
CXX.636 | L27 | Di- | 132-171 | 2 | 1 | CCAAGAAATCTTTCCAAGCG | CTGCCAAAGTGTCAAAAGTGA | Ostrander et al, 1995 |
FH2119 | L27 | Tetra- | 175-179 | ND | 2 | AGTTGTCAGCATTGTTTTCTCA | TTCAGTCTGGTATGCAATGTCC | Francisco et al, 1996 |
FH2164 | L27 | Tetra- | 303 | ND | 2 | GATTATGACTCGAACCAAAGGC | TGGAGGAAGTTCATTAAGCAGC | Francisco et al, 1996 |
FH2335 | L27 | Tetra- | 420 | ND | 2 | GAGTGGATGCCCGATGAC | CTGCTCTGAAACTCTCCTGTCA | Mellersh et al, 1997 |
FH2370 | L27 | Tetra- | 380 | ND | 2 | CCTGAAAAATAGCTAGATGATGG | GTCTTTACCTGCCTATATAGCT | Mellersh et al, 1997 |
AHTk200 | L28 | Di- | 063-071 | 4 | 3 | GATTTATCAGTTTGGAGGGTGT | TGTAGAAATCCTGAACATTACA | Thomas et al, 1997 |
CXX.733 | L28 | Di- | 180 | ND | 1 | CCCTCTACTTATGTCTCGGCC | GAGAGGAGAAACAACCAACACC | Mellersh et al, 1997 |
FH2130 | L28 | Tetra- | 302-310 | ND | 2 | GCTGTCCTGCACTTTTCCTC | GTTAAGGAATAGTTGGGGGTCC | Francisco et al, 1996 |
AHT133 | L29 | Di- | 145-162 | 2 | 4 | AGCCCTGAGTTGGCTACATTT | GCAGGAAGAGGTGCAATCTC | Holmes et al, 1995 |
CXX.172 | L29 | Di- | 156-164 | 1 | 3 | CCTGTCTCCTGTGGACCAAT | ACATGCAAAAGGACACATTACG | Ostrander et al, 1993 |
AHT123 | L30 | Di- | 076-090 | 3 | 4 | TATGTGCGTGCTAGCACACG | CATCTGAGCTGAGGGGCTCC | Holmes et al, 1995 |
FH2233 | L30 | Tetra- | 440 | ND | 2 | CCAATGCCAAATTCCTGACT | ACCATTTCCTTTCCCAAAGT | Mellersh et al, 1997 |
FH2238 | L31 | Tetra- | 322-332 | ND | 2 | TCTCAGCGTCCTGGGATC | AGAAAACATTCAGTGGTTGCC | Mellersh et al, 1997 |
M-CPH2 | L31 | Di- | 136-150* | 2 | 3 | TTCTGTTGTTATCGGCACCA | TTCTTGAGAACAGTGTCCTTCG | Fredholm & Wintero, 1995 |
UOR0421 | L31 | Tri- | 333-348 | 4 | 1 | AAAGTTCCTTATTGTCAAGGC | TTAATGTGAGTACCTTGGAGGC | by D.R. Meeks-Wagner |
CXX.889 | L32 | Di- | 107-120 | 2 | 4 | TGTATGCACACAGATAAAGT | CACACTTCCCTATACTTACACATA | by C. Gaiser |
FH2161 | L32 | Tetra- | 250 | ND | 2 | TCAGCAAGAAACCCTCCAGT | CATTCCCAACGGAGGACTCT | Francisco et al, 1996 |
FH2312 | L32 | Tetra- | 318 | ND | 2 | AAAATAATACTCATCTATATGCTGCC | ACAACATAAGAATGTGTGTCAT | Mellersh et al, 1997 |
M-CPH10 | L33 | Di- | 194-216* | 3 | 4 | TGCAAGACATGATATGTGTTTATG | GTGAGAGGCAAAAATGACCA | Fredholm & Wintero, 1995 |
PEZ8 | L33 | Tetra- | 213-260 | 1 | 4 | TATCGACTTTATCACTGTGG | ATGGAGCCTCATGTCTCATC | by J. Halverson |
TSHB | L33 | Di- | 133-137 | 1 | 4 | TTTCCATGATCAAGGATAAAAGG | GTCTCATTGCCCAGTACCAATTC | by A. McGraw |
AHTk211 | L34 | Di- | 080-102 | 2 | 1 | TTAGCAGCCGAGAAATACGC | ATTCGCCCGACTTTGGCA | Thomas et al, 1997 |
CXX.420 | L34 | Di- | 160-168 | 1 | 3 | AGAGTGCACTGCTGTCACGT | AGCCAGTGAGTGAGCCTCAT | Ostrander et al, 1995 |
AHT120 | L35 | Di- | 071-078 | 4 | 1 | CCCACAATAGGAAAACACAC | TGAACTCGGTAGGCATTTGA | Holmes et al, 1995 |
AHT128 | L35 | Di- | 078-092 | 2 | 3 | AGTTTGAAGCAGCATGGTAGTG | CGCAGTCGCATGTGTGTCTA | Holmes et al, 1998 |
CXX.140 | L35 | Di- | 128-143 | 2 | 4 | CAGAGGTGGCATAGGGTGAT | TCGAAGCCCAGAGAATGACT | Ostrander et al, 1993 |
CXX.402 | L36 | Di- | 164-181 | 2 | 3 | AAATGGGTAATTCATCCAGTGC | CAGGCTTTGTTGAGGTGTCA | Ostrander et al, 1995 |
FH2321 | L36 | Tetra- | 315 | ND | 2 | CCACTCTGAGTACAGTTGAATTGG | ACAGTTTTAGTTTTGGAGACAG | Mellersh et al, 1997 |
AR | CFAX | Di- | 178-189 | 1 | 3 | ACATCCTGAGCGAGGCTG | GGTAACTGTCCTTGGAGGAGG | Shibuya et al, 1995c* |
CHM | CFAX | Di- | 172 | ND | 2 | GGGAAGGTGGCAGTAGCAAGG | CAGAGACTAATGAGGGGGCTCC | Deschenes et al, 1994 |
CX.314 | CFAX | Di- | 144-165 | 1 | 1 | TGGGTCCTAATCTTGGTAGGG | GTTCCACGTTGGGCTCTCT | Ostrander et al, 1993 |
FVIII | CFAX | Di- | 270 | ND | 2 | GATCTAGTGCCTGTAAAAAC | CCTGGCTCCCTAGAACCACG | by S.J. Stoy |
PGK | CFAX | Di- | 180-183 | ND | 2 | AATATTTTTCATGTATAGCACTCC | ATGCTCCCTTCAGTTCTTTCC | Deschenes et al, 1994 |
AHT106 | Unlinked | Di- | 082-088 | 2 | 4 | ATGCTTGATGTCTGCGTGCG | GCCGCCTCGTTTAATGGGGT | Holmes et al, 1993b |
CXX.672 | Unlinked | Di- | 151-162 | 3 | 1 | AGGTCAGGGACAATATACCGT | CCTGAGCCCAAGGCAGAC | Ostrander et al, 1995 |
FH2244 | Unlinked | Tetra- | 465 | ND | 2 | AGTGGTTCTGGTTCAGGGTG | GTGCTCTACCCCCAGTCAAG | Mellersh et al, 1997 |
FH2247 | Unlinked | Tetra- | 200 | ND | 2 | TTCCCACTTACTTTATCATAGCAT | CAAATGCAGATTAGGGACACA | Mellersh et al, 1997 |
LEI004 | Unlinked | Di- | 086-112 | 3 | 1 | CATCATGCATCAAGCAGAGC | TCATGTAAGCAGAGACTGAC | Holmes et al, 1993b |
PEZ2 | Unlinked | Tri- | 120-134 | 1 | 4 | TCCTCTCTAACTGCCTATGC | GCCCTTGAATATGAACAATGACACTGTATC | by J. Halverson |
PEZ7 | Unlinked | Tetra- | 189-206 | 3 | 1 | ATCCTGGAGACCTGGGATTG | GATTGAGTCATCAATAGATG | by J. Halverson |
TAT | Unlinked | Di- | 155 | ND | 2 | AGCAATGTGGTGAAATGGTATG | GGCACTCAGAACTATAGGGCC | Neff et al, 1998 |
Markers typed in duplicate between the first and second-generation maps are shown in italics. Approximate product sizes are given in place of allele ranges for markers typed with autoradiographic methods. ND = Not determined. Ease of typing scores 1-4 are as described in Figure 2 of the article. PCR programs 1-4 are as described in Materials and Methods of the article.
* Allele ranges are 40 bases longer than the reported sizes (Fredholm and Wintero 1995) owing to a 20 base pair sequence added to each primer as described in Materials and Methods.
** Marker PGKAM is an autosomal locus that co-amplifies with primers for the X-linked PGK marker.
Primer pair sequences are from the following references: Deschenes et al. 1994; Fischer et al. 1996; Fredholm and Wintero 1995; Holmes et al. 1995; Holmes et al. 1993a; Holmes et al. 1993b; Holmes et al. 1994; Holmes et al. 1999; Mellersh et al. 1997; Ostrander et al. 1995; Ostrander, Sprague and Rine 1993; Shibuya et al. 1994; Stanford et al. 1997; Thomas et al. 1997; Werner et al. 1997; and Yuzbasiyan-Gurkan et al. 1997).