Training course on field trial & QTL analysis using R & R/qtl at ICRISAT, Patancheru, Andhra Pradesh, India
| Dec 3-6, 2012 | ||
| Introduction to QTL mapping: | pdf (381k) | |
| b/w, 2 slides per page: | pdf (395k) | |
| Multiple QTL mapping: | pdf (4.9M) | |
| b/w, 2 slides per page: | pdf (4.9M) | |
| R/qtl laboratory: | pdf (91k) | code | |
Short
course on Systems Genetics at The Jackson Lab
| Sep 8-14, 2013 | ||
| Introduction to QTL mapping: | pdf (382k) | |
| Multiple QTL mapping: | pdf (5.2M) | |
| R/qtl laboratory: | pdf (50k) | code | |
| Oct 28-Nov 4, 2012 | ||
| Introduction to QTL mapping: | pdf (381k) | |
| Multiple QTL mapping: | pdf (5.2M) | |
| R/qtl laboratory: | pdf (50k) | code | |
| Oct 2-9, 2011 | ||
| Introduction to QTL mapping: | pdf (1.2M) | |
| Multiple QTL mapping: | pdf (4.9M) | |
| R/qtl laboratory: | pdf (51k) | code | |
| Sep 19-25, 2010 | ||
| Introduction to QTL mapping: | pdf (268k) | |
| Multiple QTL mapping: | pdf (4.8M) | |
| R/qtl laboratory: | pdf (51k) | code | |
| Oct 19-25, 2009 | ||
| Introduction to QTL mapping: | pdf (268k) | |
| Multiple QTL mapping: | pdf (4.8M) | |
| R/qtl laboratory: | pdf (51k) | code | |
| Sep 23-29, 2008 | ||
| Introduction to QTL mapping: | pdf (268k) | |
| Multiple QTL mapping: | pdf (813k) | |
| R/qtl laboratory: | pdf (138k) | code | |
Short course on Complex Trait Analysis at The Jackson Lab
| Oct 11-17, 2007 | ||
| Introduction to QTL mapping: | pdf (4.2M) | |
| R/qtl laboratory: | pdf (125k) | code | |
| Sep 16-22, 2006 | ||
| Introduction to QTL mapping: | pdf (491k) | |
| R/qtl laboratory: | pdf (69k) | code | |
| Oct 5-11, 2005 | ||
| Introduction to QTL mapping: | pdf (453k) | |
| R/qtl laboratory: | pdf (69k) | code | |
| Sep 16-22, 2004 | ||
| Introduction to QTL mapping: | pdf (460k) | |
| R/qtl laboratory: | pdf (69k) | code | |
| Oct 9-15, 2003 | ||
| Introduction to QTL mapping: | pdf (477k) | |
| R/qtl laboratory: | pdf (54k) | code | |
| Sep 18-24, 2002 | ||
| Statistics Overview: | pdf (552k) | |
| Introduction to QTL mapping: | pdf (488k) | |
My experiences in statistical consulting
Statistical Consulting course, Department of Statistics, UW–Madison
| Slides (pdf) [source on github] | |
| Related blog post |
Experimental design, basic statistics, and sample size
determination for animal-based research
Enhancing Humane Science/Improving Animal Research course
Center for Alternatives
to Animal Testing, Johns Hopkins University
| Presentation: | ppt (1.2M) | |
| Handout: | color pdf (5.1M) | |
| B/W pdf (4.1M) |
Recombination and linkage
NS 881 (Dale Schoeller)
Department of Nutritional Sciences, University of Wisconsin - Madison
| 20 Feb 2008: | [ ppt (2.2M) | pdf (1.1M) ] |
Recombination and linkage
PHS 904 Genetic Epidemiology (Engelman)
Population Health Sciences, University of Wisconsin - Madison
| 24 Jan 2008: | [ ppt (3.8M) | pdf (1.3M) ] |
Identifying QTLs in experimental
crosses
Advanced Topics in Human Genetics (Reeves and Feinberg)
Human Genetics, Johns Hopkins School of Medicine
| 9 Apr 2007: | pdf (2.2M) | |
| 27 Feb 2006: | pdf (461k) | |
| 28 Feb 2005: | pdf (461k) | |
| 25 Feb 2004: | pdf (461k) | |
| 27 Feb 2003: | pdf (475k) | |
| 12 Feb 2002: | pdf (750k) | |
| 16 Feb 2001: | pdf (587k) | |
| 18 Feb 2000: | pdf (587k) |
NeuroproMiSe training course in genetic analysis and
bioinformatics
Lund, Sweden
Jan 8-12, 2007
| Interval mapping: | [ lecture | handout ] | ||
| AIL, RIL, RIX, HS, CC, CSS: | [ lecture | handout ] | ||
| Multiple QTL mapping: | [ lecture | handout ] | ||
| A brief tour of R/qtl: | [ handout | code | additional functions ] |
Summer
Institute in Statistical Genetics, QTL Mapping II module
(formerly at NC State University, now held at the University of
Washington, Seattle)
Summer, 2006
| Introduction: | pdf (280k) | |
| Model selection: | pdf (243k) | |
| HMMs and the pseudomarker algorithm: | pdf (1143k) | |
| R/qtl lab: | pdf (70k) | code |
| Introduction: | pdf (668k) | |
| Model selection: | pdf (51k) | |
| HMMs and the pseudomarker algorithm: | pdf (1160k) | |
| R/qtl lab: | pdf (68k) | code |
| Introduction: | pdf (638k) | |
| Model selection: | pdf (51k) | |
| HMMs and the pseudomarker algorithm: | pdf (1161k) | |
| R/qtl lab: | pdf (67k) | code |
| Introduction: | pdf (331k) | |
| Model selection: | pdf (76k) | |
| HMMs and the pseudomarker algorithm: | pdf (1186k) | |
| R/qtl lab: | pdf (69k) |
| Introduction: | pdf (755k) | |
| HMMs and the pseudomarker algorithm: | pdf (1312k) | |
| Model selection: | pdf (285k) | |
| R/qtl description/demo: | pdf (24k) |
Hopkins
Biostatistics Student Computing Club
| Mathematica | |||
| 27 Apr 2007: | [pdf (70k) | b/w pdf (77k) | Code] | ||
| How to build a web page | |||
| 8 Dec 2006: | [ppt (1.0M) | pdf (618k)] | ||
| 11 Nov 2005: | [ppt (1.1M) | pdf (618k)] | ||
Perl for human linkage analysis
Biocomputing I: Perl for bioinformatics (Pineda)
Biostatistics, Johns Hopkins Bloomberg School of Public Health
| 26 Oct 2005: | pdf (42k) | |
| 6 Dec 2004: | pdf (42k) | |
| 24 Oct 2003: | pdf (42k) | |
| 14 May 2003: | pdf (42k) |
| Last modified: Tue Oct 8 13:48:06 2013 |