Software
• EBarrays: Identification of genes differentially expressed across two or more conditions in a microarray experiment
• EB-HMM: Identification of genes differentially expressed across two or more conditions over time in a microarray experiment
• MOM: eQTL mapping
• GSCA: Identification of differentially co-expressed gene sets
• EBcoexpress: Identification of differentially co-expressed gene pairs
• EBSeq: Identification of genes and/or isoforms differentially expressed in an RNA-seq experiment
• EBSeq-HMM: Identification of genes and/or isoforms differentially expressed over time in an RNA-seq experiment
• Oscope (and soon to be released at BioC; vignette here): Identification and characterization of oscillatory genes in a snapshot single-cell RNA-seq experiment