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Tentative Course Schedule
| Week | Date | Subject | Readings |
| 1 | 1/18 | Course Overview | |
| 1/20 | Learning Motif Models | |
| 2 | 1/25 | Learning Motif Models | |
| 1/27 | Learning CRM Models | |
| 3 | 2/1 | Learning CRM Models | |
| 2/3 | Gene Finding | |
| 4 | 2/8 | Gene Finding | |
| 2/10 | guest lecture | |
| 5 | 2/15 | Gene Finding | |
| 2/17 | Large Scale Alignment | |
| 6 | 2/22 | Large Scale Alignment | |
| 2/24 | Large Scale Alignment | |
| 7 | 3/1 | Large Scale Alignment | |
| 3/3 | RNA Secondary Structure and SCFGs | |
| 8 | 3/8 | RNA Secondary Structure and SCFGs | |
| 3/10 | RNA Secondary Structure and SCFGs | |
| Spring Break |
| 9 | 3/22 | Network Models | |
| 3/24 | Network Models | |
| 10 | 3/29 | Network Models | |
| 3/31 | Network models | |
| 11 | 4/5 | Network Models | |
| 4/7 | Protein Structure Prediction | |
| 12 | 4/12 | Protein Structure Prediction | |
| 4/14 | Protein Structure Prediction | |
| 13 | 4/19 | Biomedical Text Mining | |
| 4/21 | Biomedical Text Mining | |
| 14 | 4/26 | Biomedical Text Mining | |
| 4/28 | Genotype Analysis | |
| 15 | 5/3 | Genotype Analysis | |
| 5/5 | Genotype Analysis | |
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