Biostatistics & Medical Informatics 776
Computer Sciences 776
Advanced Bioinformatics (Spring 2012)

General Course Information
What's New
Syllabus, Readings, Lecture Notes
Schedule
Homework, Project, Exam Info
DNA

Tentative Course Schedule

Week Date Subject
1 1/24 Course Overview
1/26 Learning Motif Models
2 1/31 Learning Motif Models
2/2 Learning CRM Models
3 2/7 Learning CRM Models
2/9 ChIP-Seq (Guest Lecture - Sunduz Keles)
4 2/14 Learning CRM Models
2/16 Gene Finding
5 2/21 Gene Finding
2/23 Gene Finding
6 2/28 Gene Finding
3/1 RNA-Seq Project Proposal Due
7 3/6 RNA-Seq
3/8 RNA Secondary Structure and SCFGs
8 3/13 RNA Secondary Structure and SCFGs
3/15 RNA Secondary Structure and SCFGs
9 3/20 RNA Secondary Structure and SCFGs
3/22 Large-scale alignment
10 3/27 Large-scale alignment
3/29 Large-scale alignment Project Progress Report Due
Spring Break
11 4/10 Regulatory Network Evolution (Guest Lecture - Sushmita Roy)
4/12 Comparative Network Analysis
12 4/17 Comparative Network Analysis
4/19 Protein Structure Prediction
13 4/24 Protein Structure Prediction
4/26 Biomedical Text Mining (Guest lecture - Mark Craven)
14 5/1 Genotype Analysis
5/3 Genotype Analysis
15 5/8 Genotype Analysis
5/10 Genotype Analysis