Talks

2023.10.13
"ML4Meta: Machine learning approaches for metadata standardization"
American Family Funding Initiative Networking Meeting, Madison, WI
2022.11.09
"Automating cell type classification by leveraging transcriptomic big data"
Badger Connect 2022 Keynote Talk, Madison, WI
2019.11.21
"Making the most of transcriptomic data"
CGSI seminar, Madison, WI
2019.05.20
"Teaching introductory bioinformatics with Jupyter notebook-based active learning"
Great Lakes Bioinformatics Conference (GLBIO), Madison, WI
2018.07.06
"Whole genome alignment"
ISMB 2018, Tutorial on "Computational methods for comparative genomics," Chicago, IL
2017.08.30
"Genome-wide characterization of RNA processing event dependencies"
Genome 10K and Genome Science Conference, Norwich, UK
2013.06.20
"Inference of alternative splicing from RNA-Seq data with probabilistic splice graphs"
RNA-Seq 2013, Boston, MA
2012.11.15
"Methods for RNA-Seq Data Analysis"
NGS Leaders Webinar
2012.10.19
"Issues of scale in whole genome sequence alignment and visualization"
MathBio4: Scale, UW-Madison
2012.10.03
"Inference of alternative splicing from RNA-Seq data with probabilistic splice graphs"
Department of Statistics, UW-Madison
2012.06.23
"Inference of alternative splicing from RNA-Seq data with probabilistic splice graphs"
8th International Purdue Symposium on Statistics, Purdue University, West Lafayette, IN
2011.10.28
"Enabling transcript quantification in non-model organisms with RNA-Seq and generative probabilistic models"
Workshop on Transcriptomics and Epigenomics, IPAM, University of California, Los Angeles
2011.10.05
"Enabling transcript quantification in non-model organisms with RNA-Seq and generative probabilistic models"
Combi seminar, Department of Genome Sciences, University of Washington
2011.04.05
"Beyond counts: quantifying transcript expression with RNA-Seq and generative probabilistic models"
Center for Bioinformatics & Computational Biology Seminar, University of Maryland
2011.03.22
"Local alignments as approximations for next-generation sequencing statistical models"
ENAR 2011 Spring Meeting, Miami, FL
2011.02.09
"Beyond counts: quantifying transcript expression with RNA-Seq and generative probabilistic models"
Mathematical and Computational Biology Seminar, UC Berkeley
2011.02.07
"Beyond counts: quantifying transcript expression with RNA-Seq and generative probabilistic models"
UCLA Bioinformatics Program
2010.04.13
"Approximating statistical genomics models with local alignments: applications to gene expression estimation and whole-genome orthology prediction"
Department of Biosystems Science and Engineering, ETH Zürich
2009.10.06
"Transcriptome analysis methods for RNA-Seq data"
Critical Assessment of Massive Data Analysis (CAMDA) 2009, Chicago, IL
2009.04.09
"Biological sequence alignment: a convergence of computer science and statistics"
Department of Computer Science, Northern Illinois University
2008.11.17
"Bioinformatics: addressing the central dogma through computer science, statistics, and mathematics"
ECE 600 Seminar in Electrical and Computer Engineering, UW-Madison
2007.09.18
"On the complexity of the human genome: insights from the ENCODE project"
Computation and Informatics in Biology and Medicine (CIBM) Seminar Series, UW-Madison
2007.09.04
"On the complexity of the human genome: insights from the ENCODE project"
Chaos and Complex Systems Seminar Series, UW-Madison
2007.06.08
"Correlation of evolutionary constraint and biological function in the human genome: A report from the ENCODE project"
Genomic Sciences Training Program (GSTP) retreat, UW-Madison
2007.05.03
"Evolutionary analyses from vertebrate whole-genome alignments"
Evolution Seminar Series, UW-Madison
2006.11.14
"The genome alignment problem"
Computation and Informatics in Biology and Medicine (CIBM) Seminar Series, UW-Madison
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