Talks
- 2023.10.13
- "ML4Meta: Machine learning approaches for metadata standardization"
American Family Funding Initiative Networking Meeting, Madison, WI
- 2022.11.09
- "Automating cell type classification by leveraging transcriptomic big data"
Badger Connect 2022 Keynote Talk, Madison, WI
- 2019.11.21
- "Making the most of transcriptomic data"
CGSI seminar, Madison, WI
- 2019.05.20
- "Teaching introductory bioinformatics with Jupyter notebook-based active learning"
Great Lakes Bioinformatics Conference (GLBIO), Madison, WI
- 2018.07.06
- "Whole genome alignment"
ISMB 2018, Tutorial on "Computational methods for comparative genomics," Chicago, IL
- 2017.08.30
- "Genome-wide characterization of RNA processing event dependencies"
Genome 10K and Genome Science Conference, Norwich, UK
- 2013.06.20
- "Inference of alternative splicing from RNA-Seq data with probabilistic splice graphs"
RNA-Seq 2013, Boston, MA
- 2012.11.15
- "Methods for RNA-Seq Data Analysis"
NGS Leaders Webinar
- 2012.10.19
- "Issues of scale in whole genome sequence alignment and visualization"
MathBio4: Scale, UW-Madison
- 2012.10.03
- "Inference of alternative splicing from RNA-Seq data with
probabilistic splice graphs"
Department of Statistics, UW-Madison
- 2012.06.23
- "Inference of alternative splicing from RNA-Seq data with
probabilistic splice graphs"
8th International Purdue Symposium on Statistics,
Purdue University, West Lafayette, IN
- 2011.10.28
- "Enabling transcript quantification in non-model organisms with RNA-Seq and generative probabilistic models"
Workshop on Transcriptomics and Epigenomics, IPAM,
University of California, Los Angeles
- 2011.10.05
- "Enabling transcript quantification in non-model organisms with RNA-Seq and generative probabilistic models"
Combi
seminar, Department of Genome Sciences,
University of Washington
- 2011.04.05
- "Beyond counts: quantifying transcript expression with RNA-Seq and
generative probabilistic models"
Center for Bioinformatics &
Computational Biology Seminar, University of Maryland
- 2011.03.22
- "Local alignments as approximations for next-generation sequencing statistical models"
ENAR 2011 Spring Meeting,
Miami, FL
- 2011.02.09
- "Beyond counts: quantifying transcript expression with RNA-Seq and
generative probabilistic models"
Mathematical
and Computational Biology Seminar, UC Berkeley
- 2011.02.07
- "Beyond counts: quantifying transcript expression with RNA-Seq and
generative probabilistic models"
UCLA Bioinformatics
Program
- 2010.04.13
- "Approximating statistical genomics models with local alignments:
applications to gene expression estimation and whole-genome orthology
prediction"
Department of Biosystems Science and
Engineering, ETH Zürich
- 2009.10.06
- "Transcriptome analysis methods for RNA-Seq data"
Critical
Assessment of Massive Data Analysis (CAMDA) 2009,
Chicago, IL
- 2009.04.09
- "Biological sequence alignment: a convergence of computer science and statistics"
Department of Computer Science,
Northern Illinois University
- 2008.11.17
- "Bioinformatics: addressing the central dogma through computer science, statistics, and mathematics"
ECE 600 Seminar in Electrical and Computer Engineering, UW-Madison
- 2007.09.18
- "On the complexity of the human genome: insights from the ENCODE project"
Computation and Informatics in Biology and Medicine (CIBM) Seminar Series, UW-Madison
- 2007.09.04
- "On the complexity of the human genome: insights from the ENCODE project"
Chaos and Complex Systems Seminar Series, UW-Madison
- 2007.06.08
- "Correlation of evolutionary constraint and biological function in the human genome: A report from the ENCODE project"
Genomic Sciences Training Program (GSTP) retreat, UW-Madison
- 2007.05.03
- "Evolutionary analyses from vertebrate whole-genome alignments"
Evolution Seminar Series, UW-Madison
- 2006.11.14
- "The genome alignment problem"
Computation and Informatics in Biology and Medicine (CIBM) Seminar Series, UW-Madison
