| Week | Date | Subject | Notes |
| 1 | 1/17 | Course Overview | |
| 1/19 | Learning Motif Models | |
| 2 | 1/24 | Learning Motif Models | |
| 1/26 | Learning Motif Models | |
| 3 | 1/31 | Learning Motif Models | |
| 2/2 | Learning CRM Models | |
| 4 | 2/7 | Learning CRM Models | |
| 2/9 | Genotype Analysis | |
| 5 | 2/14 | Genotype Analysis | |
| 2/16 | Genotype Analysis | |
| 6 | 2/21 | Epigenomics | |
| 2/23 | Epigenomics | |
| 7 | 2/28 | Epigenomics | |
| 3/2 | Epigenomics | |
| 8 | 3/7 | | Midterm (in class) |
| 3/9 | Epigenomics | |
| 9 | 3/14 | RNA-Seq and Mass Spectrometry | |
| 3/16 | RNA-Seq and Mass Spectrometry | Project Proposal Due |
| Spring Break |
| 10 | 3/28 | RNA-Seq and Mass Spectrometry | |
| 3/30 | RNA-Seq and Mass Spectrometry | |
| 11 | 4/4 | Network Analysis | |
| 4/6 | Network Analysis | |
| 12 | 4/11 | Gene Finding | |
| 4/13 | Gene Finding | Project Progress Report Due |
| 13 | 4/18 | Large-scale Alignment | |
| 4/20 | Large-scale Alignment | |
| 14 | 4/25 | RNA Secondary Structure and SCFGs | |
| 4/27 | RNA Secondary Structure and SCFGs | |
| 15 | 5/2 | Protein Structure Prediction | |
| 5/4 | Protein Structure Prediction | |
| 5/7 | | Final Exam |
| 5/10 | | Project Report Due |
